On your machine.
On your terms.
The Python analysis engine runs locally. Bring your data into your own workspace, without a browser-based upload pipeline.
Understand the data boundary ↗Look deeper.
Know why.
Your data, methods and evidence.
One local-first
bioinformatics workbench.
EleuScope takes you from a biological question to an analysis you can inspect—with visible code and a record of how you got there.
Built for researchers. Designed to keep you in control.
FROM LIFE TO INSIGHT01 / 09
A closer look changes the question.
ORGANISM · CONCEPTUAL ART
Start with a living question.
Follow the butterfly from its wing to the structures within, then explore how data becomes a figure.
Inspect the example 240 cells · synthetic data
These simulated counts illustrate the workflow. They are not measurements of the butterfly. Groups A–D are simulation labels, not inferred cell types.
| Feature | Count |
|---|
UMAP of normalized, log-transformed counts. 240 cells × 16 features; 15 neighbors; minimum distance 0.22; fixed seed 20260917. Group colors follow the simulation labels.
01 / A DIFFERENT STARTING POINT
Good science needs
Good science needs
more than an answer.
On your machine.
Open the code.
Question the method.
Review the analysis and its assumptions. Scientific preflight brings replication, pairing and confounding into the conversation.
Follow a workflow ↗Keep the trail.
Not just the figure.
Keep methods, references and recorded decisions close to the work. A result should come with context, not an unexplained label.
See the scientific scope ↗
02 / INSIDE THE WORKBENCH
Keep your train of thought.
Keep your train of thought.
And the work behind it.
A connected workspace for the parts of research
that
shouldn’t be scattered across windows.
Run the example. Inspect the variables. Save and reopen your work. Captured from the Windows app using synthetic data—not a biological result. Open the image to inspect it at full size.
- Bring your data
- AnnData (.h5ad) and supported 10x inputs for single-cell work. CSV, TSV or XLSX counts and sample metadata for guided bulk analysis.
- Start locally
- The included synthetic notebook needs no API key or internet connection. AI-assisted features have a separate provider and data-sharing boundary.
- Know the release scope
- Windows x64 and macOS Apple Silicon are the intended targets. Public installers and final system requirements are still pending qualification.
BEFORE THE ANALYSIS
Ask the right questions first.
A method is only useful when it fits the experiment. Inspect the design before interpreting the result.
- Biological replicates
- Check independent samples per group
- Pairing & covariates
- Choose a design that reflects the experiment
- Confounding
- Inspect before fitting a model
Interface walkthrough, not an analysis result. The desktop app includes Light, Dim and Terminal skins; scientific figure encodings stay consistent.
03 / SCIENTIFIC SCOPE
Different questions.
Different questions.
Deliberate methods.
Tools for exploration and analysis.
Boundaries that stay
visible.
01
GUIDED ANALYSIS
Bulk RNA-seq
Start with raw counts and sample metadata. Review the experimental design before differential expression.
Guided v1: two independent, unpaired groups. Paired and covariate-adjusted designs are not supported here.
02
EXPLORATION
Single-cell
Inspect quality, explore populations and review annotation candidates without losing the context.
Cell counts are not a substitute for biological replication.
03
TRACEABILITY
References & records
Inspect citations, methods and recorded decisions. Keep the reasoning connected to the work.
A resolved reference does not prove a biological claim.
04
BETA WORKFLOWS
The next questions
Atlas Match, conversational planning, spatial, multimodal and observed perturbation workflows.
Emerging tools retain explicit limitations; availability is not validation.
04 / WHAT COMES NEXT
Help shape EleuScope.
Join the beta list and try EleuScope Beta 1 for Windows. Leave your email so we can contact you about testing. The download is available immediately; signing up does not create a paid account.
Download Windows beta1.8.1-beta.1 · Windows 64-bit · 395 MB · Unsigned test installerVersion & SHA-256 checksumTesting notes & feedback
Care is part of the product.
Signed installers, reviewed scientific evidence, published policies and tested support are requirements for public release.
A working demo is not a validation claim. No paid plan or bundled AI allowance is offered here without approved commercial configuration.
No purchase required for the available local tools. Subscription AI and some Pro features are not enabled in this beta.
THE PRACTICAL DETAILS
Before you
Before you
look closer.
Does EleuScope run in my browser?
No. This is the product website. EleuScope is a downloadable desktop application with a local Python engine.
Does every feature work offline?
Core analysis runs locally with installed packages and reference packs. AI services, remote references, activation and updates can require internet access. Availability depends on the workflow and installed dependencies.
Is my research sent to an AI provider?
Local analysis does not require an AI provider. When you explicitly use an AI-assisted feature, relevant context is sent through the configured connection. Review the feature’s data disclosure before using sensitive information. This website does not upload or analyze research data.
Is the product scientifically validated?
Software tests do not establish scientific validity. Workflow-specific real-data qualification and independent review are tracked separately. Check the Validation Center and retain the limitations for your analysis.